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Handley, Jonathan

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  • Progressing delineations of key biodiversity areas for seabirds, and their application to management of coastal seas
    Publication . Handley, Jonathan; Harte, Emma; Stanworth, Andrew; Poncet, Sally; Catry, Paulo; Cleminson, Sacha; Crofts, Sarah; Dias, Maria
    Aim: Decision-making products that support effective marine spatial planning are essential for guiding efforts that enable conservation of biodiversity facing increasing pressures. Key Biodiversity Areas (KBAs) are a product recently agreed upon by an international network of organizations for identifying globally important areas. Utilizing the KBA framework, and by developing a conservative protocol to identify sites, we identify globally importants places for breeding seabirds throughout the coastal seas of a national territory. We inform marine spatial planning by evaluating potential activities that may impact species and how a proposed network of Marine Management Areas (MMAs) overlap with important sites. Location: Southwest Atlantic Ocean. Methods: We collated a national inventory of all breeding locations for seabirds, including abundance records where available, and complementary estimates of at-sea distribution. We delineated areas of importance in coastal seas following approaches tailored to the ecology of species and assessed areas against global KBA criteria. To determine opportunities for species conservation and management, we reviewed which human activities have been documented to impact the target species globally via IUCN Red List accounts, and also assessed the overlap of important sites with a proposed MMA network. Results: We identified global KBAs for nine seabird species (Anatidae, Diomedeidae, Laridae, Procellariidae, Spheniscidae, Stercorariidae) throughout national coastal seas. Globally important areas where multiple species overlapped were only partially accounted for in key zones of the proposed MMA network. Main Conclusions: Development of a conservative protocol to identify marine sites for assessment against KBA criteria, revealed opportunities for enhancing a network of proposed Marine Management Areas in coastal seas. The framework we apply in this study has broad relevance for other systems where the design or review of management plans for the marine environment is required.
  • track2KBA: An R package for identifying important sites for biodiversity from tracking data
    Publication . Beal, Martin; Oppel, Steffen; Handley, Jonathan; Pearmain, Elizabeth J.; Pujol, Virginia Morera; Carneiro, Ana P. B.; Davies, Tammy; Phillips, Richard A.; Taylor, Philip R.; Miller, Mark G. R.; Franco, Aldina; Catry, Inês; Patrício, Ana Rita; Regalla De Barros, Aissa; Staniland, Iain; Boyd, Charlotte; Catry, Paulo; Dias, Maria P.
    Abstract 1. Identifying important sites for biodiversity is vital for conservation and management. However, there is a lack of accessible, easily applied tools that enable practitioners to delineate important sites for highly mobile species using established criteria. 2. We introduce the R package ‘track2KBA’, a tool to identify important sites at the population level using tracking data from individual animals based on three key steps: (a) identifying individual core areas, (b) assessing population-level representativeness of the sample and (c) quantifying spatial overlap among individuals and scaling up to the population. 3. We describe package functionality and exemplify its application using tracking data from three taxa in contrasting environments: a seal, a marine turtle and a migratory land bird. 4. This tool facilitates the delineation of sites of ecological relevance for diverse taxa and provides output useful for assessing their importance to a population or species, as in the Key Biodiversity Area (KBA) Standard. As such, ‘track2KBA’ can contribute directly to conservation planning at global and regional levels.
  • Important At-Sea areas of colonial breeding marine predators on the Southern Patagonian Shelf
    Publication . Baylis, Matthew; Tierney, Megan; Orben, Rachael; Evans, Victoria Warwick; Wakefield, Ewan; Grecian, William James; Trathan, Phil; Reisinger, Ryan R.; Ratcliffe, Norman Arthur; Croxall, John; Campioni, Letizia; Catry, Paulo; Crofts, Sarah; Boersma, P. Dee; Galimberti, Filippo; Granadeiro, José Pédro; Handley, Jonathan; Hayes, Sean; Hedd, April; Masello, Juan; Montevecchi, William A.; Pütz, Klemens; Quillfeldt, Petra; Rebstock, Ginger A.; Sanvito, Simona; Staniland, Iain; Brickle, Paul
    The Patagonian Shelf Large Marine Ecosystem supports high levels of biodiversity and endemism and is one of the most productive marine ecosystems in the world. Despite the important role marine predators play in structuring the ecosystems, areas of high diversity where multiple predators congregate remains poorly known on the Patagonian Shelf. Here, we used biotelemetry and biologging tags to track the movements of six seabird species and three pinniped species breeding at the Falkland Islands. Using Generalized Additive Models, we then modelled these animals' use of space as functions of dynamic and static environmental indices that described their habitat. Based on these models, we mapped the predicted distribution of animals from both sampled and unsampled colonies and thereby identified areas where multiple species were likely to overlap at sea. Maximum foraging trip distance ranged from 79 to 1,325 km. However, most of the 1,891 foraging trips by 686 animals were restricted to the Patagonian Shelf and shelf slope, which highlighted a preference for these habitats. Of the seven candidate explanatory covariates used to predict distribution, distance from the colony was retained in models for all species and negatively affected the probability of occurrence. Predicted overlap among species was highest on the Patagonian Shelf around the Falkland Islands and the Burdwood Bank. The predicted area of overlap is consistent with areas that are also important habitat for marine predators migrating from distant breeding locations. Our findings provide comprehensive multi-species predictions for some of the largest marine predator populations on the Patagonian Shelf, which will contribute to future marine spatial planning initiatives. Crucially, our findings highlight that spatially explicit conservation measures are likely to benefit multiple species, while threats are likely to impact multiple species.
  • A framework for mapping the distribution of seabirds by integrating tracking, demography and phenology
    Publication . Carneiro, Ana Paula B.; Pearmain, Elizabeth J.; Oppel, Steffen; Clay, Thomas A.; Phillips, Richard A.; Bonnet‐Lebrun, Anne‐Sophie; Wanless, Ross M.; Abraham, Edward; Richard, Yvan; Rice, Joel; Handley, Jonathan; Davies, Tammy E.; Dilley, Ben J.; Ryan, Peter G.; Small, Cleo; Arata, Javier; Arnould, John P. Y.; Bell, Elizabeth; Bugoni, Leandro; Letizia, Campioni; Catry, Paulo; Cleeland, Jaimie; Deppe, Lorna; Elliott, Graeme; Freeman, Amanda; Gonzalez-Solis, Jacob; Granadeiro, José Pedro; Grémillet, David; Landers, Todd J.; Makhado, Azwianewi; Nel, Deon; Nicholls, David G.; Rexer‐Huber, Kalinka; Robertson, Christopher J. R.; Sagar, Paul M.; Scofield, Paul; Stahl, Jean‐Claude; Stanworth, Andrew; Stevens, Kim L.; Trathan, Philip N.; Thompson, David R.; Torres, Leigh; Walker, Kath; Waugh, Susan M.; Weimerskirch, Henri; Dias, Maria P.
    1. The identification of geographic areas where the densities of animals are highest across their annual cycles is a crucial step in conservation planning. In marine environments, however, it can be particularly difficult to map the distribution of species, and the methods used are usually biased towards adults, neglecting the distribution of other life-history stages even though they can represent a substantial proportion of the total population. 2. Here we develop a methodological framework for estimating populationlevel density distributions of seabirds, integrating tracking data across the main life-history stages (adult breeders and non-breeders, juveniles and immatures). We incorporate demographic information (adult and juvenile/immature survival, breeding frequency and success, age at first breeding) and phenological data (average timing of breeding and migration) to weight distribution maps according to the proportion of the population represented by each life-history stage. 3. We demonstrate the utility of this framework by applying it to 22 species of albatrosses and petrels that are of conservation concern due to interactions with fisheries. Because juveniles, immatures and non-breeding adults account for 47%–81% of all individuals of the populations analysed, ignoring the distributions of birds in these stages leads to biased estimates of overlap with threats, and may misdirect management and conservation efforts. Population-level distribution maps using only adult distributions underestimated exposure to longline fishing effort by 18%–42%, compared with overlap scores based on data from all lifehistory stages. 4. Synthesis and applications. Our framework synthesizes and improves on previous approaches to estimate seabird densities at sea, is applicable for data-poor situations, and provides a standard and repeatable method that can be easily updated as new tracking and demographic data become available. We provide scripts in the R language and a Shiny app to facilitate future applications of our approach. We recommend that where sufficient tracking data are available, this framework be used to assess overlap of seabirds with at-sea threats such as overharvesting, fisheries bycatch, shipping, offshore industry and pollutants. Based on such an analysis, conservation interventions could be directed towards areas where they have the greatest impact on populations.
  • Marine Important bird and biodiversity areas for penguins in Antarctica, targets for conservation action
    Publication . Handley, Jonathan; Rouyer, Marie-Morgane; Pearmain, Elizabeth J.; Warwick-Evans, Victoria; Teschke, Katharina; Hinke, Jefferson T; Lynch, Heather; Emmerson, Louise; Southwell, Colin; Griffith, Gary; Cárdenas, César A.; Franco, Aldina; Trathan, Phil; Dias, Maria P.
    Global targets for area-based conservation and management must move beyond threshold-based targets alone and must account for the quality of such areas. In the Southern Ocean around Antarctica, a region where key biodiversity faces unprecedented risks from climate change and where there is a growing demand to extract resources, a number of marine areas have been afforded enhanced conservation or management measures through two adopted marine protected areas (MPAs). However, evidence suggests that additional high quality areas could benefit from a proposed network of MPAs. Penguins offer a particular opportunity to identify high quality areas because these birds, as highly visible central-place foragers, are considered indicator species whose populations reflect the state of the surrounding marine environment. We compiled a comprehensive dataset of the location of penguin colonies and their associated abundance estimates in Antarctica.We then estimated the at-sea distribution of birds based on information derived from tracking data and through the application of a modified foraging radius approach with a density decay function to identify some of the most important marine areas for chick-rearing adult penguins throughout waters surrounding Antarctica following the Important Bird and Biodiversity Area (IBA) framework. Additionally, we assessed how marine IBAs overlapped with the currently adopted and proposed network of key management areas (primarily MPAs), and how the krill fishery likely overlapped with marine IBAs over the past five decades. We identified 63 marine IBAs throughout Antarctic waters and found that were the proposed MPAs to be adopted, the permanent conservation of high quality areas for species would increase by between 49 and 100% depending on the species. Furthermore, our data show that, despite a generally contracting range of operation by the krill fishery in Antarctica over the past five decades, a consistently disproportionate amount of krill is being harvested within marine IBAs compared to the total area in which the fishery operates. Our results support the designation of the proposed MPA network and offer additional guidance as to where decision-makers should act before further perturbation occurs in the Antarctic marine ecosystem.