MARE – Centro de Ciências do Mar e do Ambiente, ISPA
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- A 2021 Horizon Scan of Emerging Global Biological Conservation IssuesPublication . Sutherland, William; Atkinson, Helen; Broad, Steven; Brown, Sam; Clout, Mick; Dias, Maria P.; Dicks, Lynn V.; Doran, Helen; Fleishman, Erica; Garratt, Elizabeth L.; Gaston, Kevin J.; Hughes, Alice C.; Le Roux, Xavier; Lickorish, Fiona; Maggs, Luke; Palardy, James E.; Peck, Dawn S; Pettorelli, Nathalie; Pretty, Jules; Spalding, Mark D.; Tonneijck, Femke H.; Walpole, Matt; Watson, James; Wentworth, Jonathan; Thornton, AnnWe present the results from our 12th annual horizon scan of issues likely to impact biological conservation in the future. From a list of 97 topics, our global panel of 25 scientists and practitioners identified the top 15 issues that we believe society may urgently need to address. These issues are either novel in the biological conservation sector or represent a substantial positive or negative step-change in impact at global or regional level. Six issues, such as coral reef deoxygenation and changes in polar coastal productivity, affect marine or coastal ecosystems and seven relate to human and ecosystem-level responses to climate change. Identification of potential forthcoming issues for biological conservation may enable increased preparedness by researchers, practitioners, and decision-makers.
- Absence of consistent genetic differentiation among several morphs of Actinia (Actiniaria: Actiniidae) occurring in the portuguese coastPublication . Pereira, Ana Martins; Brito, Cristiana Maria; Sanches, Joana; Santos, Carla Sousa; Robalo, Joana IsabelActinia equina, the beadlet sea anemone, is a very labile species, displaying variable colour patterns, broad habitat choice and diverse modes of reproduction. Historically, studies using genetic markers such as allozymes and differences in habitat choice lead several authors to propose that different colour morphs could represent different species. One of the species defined was A. fragacea. In this paper, the relationships between brown, red and green colour morphs of A. equina and A. fragacea were studied, using two DNA fragments (one mitochondrial and one nuclear). Individuals were sampled from three different areas in Portugal separated by a maximum distance of 500 km. This is the first study applying direct sequencing of selected gene fragments to approach the validity of Actinia morphs as different genetic entities. The results show that, at least in the Portuguese coast, these colour morphs do not correspond to the two valid species recognized in the literature. The existence of cryptic species is discussed.
- Absence of haemosporidian parasite infections in the long-lived Cory’s shearwater: evidence from molecular analyses and review of the literaturePublication . Campioni, Letizia; Martínez-de la Puente, Josué; Figuerola, Jordi; Granadeiro, José P.; Silva, Mónica C.; Catry, PauloThe apparent scarcity or absence of blood parasites in some avian groups, such as seabirds, has been related to intrinsic and extrinsic factors including host immunological capacity, host-parasite assemblage, and ecological parameters, but also to reduced sensitivity of some methods to detect low parasite prevalence/intensities of infection. Here, we examined the haemosporidian parasite prevalence in a breeding population of Cory's shearwater Calonectris diomedea borealis, a long-distance migrant seabird, nesting in the Macaronesian region, in the Eastern Atlantic. Previous studies on Calonectris diomedea complex were based on small sample sizes providing weak evidence for a lack of infections by haemoparasites. Here, we investigated the presence of both parasite infections in C. d. borealis and larvae of potential mosquito vectors on the area. By employing a PCR-based assay, we extensively examined the prevalence of blood parasites belonging to the genera Plasmodium, Haemoproteus, and Leucocytozoon in 286 individuals from different life stages (i.e., chicks, immatures, sabbatical, and breeding adults), facing their specific energetic trade-offs (immunological functions vs. life history activities). We sampled immatures and adult shearwaters, of different sexes, ages, and migratory origins, from two sub-colonies. None of the sampled individuals were infected by these parasites, supporting the hypothesis that there was no in situ or ex situ transmission of vector-borne parasites in marine habitats irrespective of host's life stage and in spite of the presence of the potential Plasmodium vector Culiseta longiareolata breeding in the area. These results suggest that the lack of transmission of haemosporidian parasites on Selvagem Grande may be related to the lack of suitable dipteran vectors at the study sites, which may result from the geographic isolation of this area.
- Absence of haemosporidian parasite infections in the long-lived Cory’s shearwater: Evidence from molecular analyses and review of the literaturePublication . Campioni, Letizia; Martínez-de la Puente, Josué; Figuerola, Jordi; Granadeiro, José Pedro; Silva, Mónica C.; Catry, PauloThe apparent scarcity or absence of blood parasites in some avian groups, such as seabirds, has been related to intrinsic and extrinsic factors including host immunological capacity, host-parasite assemblage, and ecological parameters, but also to reduced sensitivity of some methods to detect low parasite prevalence/intensities of infection. Here, we examined the haemosporidian parasite prevalence in a breeding population of Cory's shearwater Calonectris diomedea borealis, a long-distance migrant seabird, nesting in the Macaronesian region, in the Eastern Atlantic. Previous studies on Calonectris diomedea complex were based on small sample sizes providing weak evidence for a lack of infections by haemoparasites. Here, we investigated the presence of both parasite infections in C. d. borealis and larvae of potential mosquito vectors on the area. By employing a PCR-based assay, we extensively examined the prevalence of blood parasites belonging to the genera Plasmodium, Haemoproteus, and Leucocytozoon in 286 individuals from different life stages (i.e., chicks, immatures, sabbatical, and breeding adults), facing their specific energetic trade-offs (immunological functions vs. life history activities). We sampled immatures and adult shearwaters, of different sexes, ages, and migratory origins, from two sub-colonies. None of the sampled individuals were infected by these parasites, supporting the hypothesis that there was no in situ or ex situ transmission of vector-borne parasites in marine habitats irrespective of host's life stage and in spite of the presence of the potential Plasmodium vector Culiseta longiareolata breeding in the area. These results suggest that the lack of transmission of haemosporidian parasites on Selvagem Grande may be related to the lack of suitable dipteran vectors at the study sites, which may result from the geographic isolation of this area.
- Acoustic complexity of vocal fish communities: A field and controlled validationPublication . Bolgan, Marta; Amorim, Maria Clara Pessoa; Fonseca, Paulo João; Di Iorio, Lucia; Parmentier, EricThe Acoustic Complexity Index (ACI) is increasingly applied to the study of biodiversity in aquatic habitats. However, it remains unknown which types of acoustic information are highlighted by this index in underwater environments. This study explored the robustness of the ACI to fine variations in fish sound abundance (i.e. number of sounds) and sound diversity (i.e. number of sound types) in field recordings and controlled experiments. The ACI was found to be sensitive to variations in both sound abundance and sound diversity, making it difficult to discern between these variables. Furthermore, the ACI was strongly dependent on the settings used for its calculation (i.e. frequency and temporal resolution of the ACI algorithm, amplitude filter). Care should thus be taken when comparing ACI absolute values between studies, or between sites with site-specific characteristics (e.g. species diversity, fish vocal community composition). As the use of ecoacoustic indices presents a promising tool for the monitoring of vulnerable environments, methodological validations like those presented in this paper are of paramount importance in understanding which biologically important information can be gathered by applying acoustic indices to Passive Acoustic Monitoring data.
- Acoustic monitoring of anurans and birds in tropical biomesPublication . Barros De Araújo, Carlos; Lima, Marcos Robalinho; Albuquerque, P.; Alquezar, Renata D.; Barreiros, M.; Jardim, M.; Gangenova, E.; Machado, R. B.; Phalan, Ben; Roos, A. L; Rosa, G. L. M.; Saturnino, N.; Simões, Cássio Rachid; Torres, I. M. D.; Varela, Diego; Zurano, Juan Pablo; Marques, P. A. M.; Dos Anjos, LuizPassive acoustic monitoring (PAM) is increasingly popular in ecological research, but recording and analyzing large amounts of data is still a critical bottleneck for the long-term monitoring of multiple species. We evaluated how temporal and spatial sampling effort affects species diversity estimates using a set of 14,045 1-min recordings from various neotropical birds and anuran communities. Our goals were to evaluate (i) the daily vocal activity cycle of birds and anurans, (ii) the effect of temporal structure (e.g., number of minutes listened each hour; continuous versus intermittent recordings) on determining the species composition, and (iii) the species–area relationship, and how the number of recorders affects species richness estimates. Based on sampling coverage and completeness, we (iv) evaluate manual inspection schedules for birds and anurans across four biomes of Brazil. We found marked diel variation in vocal activity between taxonomic groups, indicating that birds and anurans are more efficiently detected during early periods of the day and night, respectively. For proper diversity estimates, biomes with higher biodiversity required longer inspecting periods and a larger number of replicates, irrespective of taxa. Although fewer recordings per hour are less informative than full-hour sampling, species diversity is better estimated when inspected minutes are interspersed over longer periods than inspecting minutes recorded over shorter timespans. Based on our findings, we recommend how to set PAM programs over highly diverse ecosystems.
- Adaptation of sea turtles to climate warming: Will phenological responses be sufficient to counteract changes in reproductive output?Publication . Fuentes, Mariana; Santos, Armando Jose Barsante; Abreu-Grobois, F. Alberto; Briseño‐Dueñas, R.; Al-Khayat, Jassim; Hamza, Shafeeq; Saliba, Sally; Anderson, D.; Rusenko, Kirt; Mitchell, N. J.; Gammon, Malindi Jane; Bentley, Blair P; Beton, Damla; Booth, David; Broderick, Annette; Colman, Liliana; Snape, Robin; Calderon‐Campuzano, M. F.; Cuevas, Eduardo; López-Castro, M. C.; Flores-Aguirre, Cynthia Dinorah; Mendez, Fausto; Segura‐Garcia, Y.; Ruiz‐Garcia, A.; Fossette, Sabrina; Gatto, Christopher; Reina, Richard; Girondot, Marc; Godfrey, M.; Guzman Hernandez, Vicente; Hart, Catherine Edwina; Kaska, Yakup; Lara, P.H.; Marcovaldi, Maria Angela; Leblanc, Nia; Rostal, D.; Liles, Mark; Wyneken, Jeanette; Lolavar, Alexandra; Williamson, Sean; Manoharakrishnan, Muralidharan; Pusapati, Chandana; Chatting, Mark; Mohd Salleh, Sarahaizad; Patrício, Ana Rita; Regalla, A.; Restrepo, J.; Garcia, R.; Tomillo, Pilar Santidrián; Sezgin, Çisem; Shanker, Kartik; Tapilatu, F.; Turkozan, Oguz; Valverde, Clodoaldo; Carroll, Kristina Williams; Yilmaz, Can; Tolen, Nicholas; Tucek, J.; Le Gouvello Du Timat, Diane, Zelica, Marie; Rivas, Marga; Freire, Jordana; Touron, M.; Genet, Q.; Salmon, M.; Araujo, M. R.; Freire, J. B.; Davel Castheloge, Vinicius; Jesus, Paulo Roberto; Júnior, Paulo Dias Ferreira; Paladino, Frank V.; Montero‐Flores, D.; Sözbilen, Doğan; Monsinjon, JonathanSea turtles are vulnerable to climate change since their reproductive output is influenced by incubating temperatures, with warmer temperatures causing lower hatching success and increased feminization of embryos. Their ability to cope with projected increases in ambient temperatures will depend on their capacity to adapt to shifts in climatic regimes. Here, we assessed the extent to which phenological shifts could impacts from increases in ambient temperatures (from 1.5 to 3°C in air temperatures and from 1.4 to 2.3°C in sea surface temperatures by 2100 at our sites) on four species of sea turtles, under a “middle of the road” scenario (SSP2-4.5). Sand temperatures at sea turtle nesting sites are projected to increase from 0.58 to 4.17°C by 2100 and expected shifts in nesting of 26–43 days earlier will not be sufficient to maintain current incubation temperatures at 7 (29%) of our sites, hatching success rates at 10 (42%) of our sites, with current trends in hatchling sex ratio being able to be maintained at half of the sites. We also calculated the phenological shifts that would be required (both backward for an earlier shift in nesting and forward for a later shift) to keep up with present-day incubation temperatures, hatching success rates, and sex ratios. The required shifts backward in nesting for incubation temperatures ranged from −20 to −191 days, whereas the required shifts forward ranged from +54 to +180 days. However, for half of the sites, no matter the shift the median incubation temperature will always be warmer than the 75th percentile of current ranges. Given that phenological shifts will not be able to ameliorate predicted changes in temperature, hatching success and sex ratio at most sites, turtles may need to use other adaptive responses and/or there is the need to enhance sea turtle resilience to climate warming.
- Aeromonas spp. Prevalence, virulence, and antimicrobial resistance in an ex situ program for tThreatened freshwater fish—A pilot study with protective measuresPublication . Grilo, Miguel; Amaro, Guadalupe; Chambel, Lélia; Marques, Carolina S.; Marques, Tiago A.; Gil, Fátima; Sousa-Santos, Carla; Robalo, Joana; Oliveira, ManuelaEx situ breeding programs are important conservation tools for endangered freshwater fish. However, developing husbandry techniques that decrease the likelihood of disease, antimicrobial resistance, and virulence determinants acquisition during this process is challenging. In this pilot study, we conducted a captivity experiment with Portuguese nase (Iberochondrostoma lusitanicum), a critically endangered leuciscid species, to investigate the influence of simple protective measures (i.e., material disinfection protocols and animal handling with gloves) on the dynamics of a potential pathogenic genus, Aeromonas, as well as its virulence profiles and antimicrobial resistance signatures. Our findings show that antimicrobial resistance in Aeromonas spp. collected from I. lusitanicum significantly increased during the extent of the assay (5 weeks), with all isolates collected at the end of the study classified as multidrug-resistant. Additionally, humans handling fishes without protective measures were colonized by Aeromonas spp. The use of protective measures suggested a decreasing trend in Aeromonas spp. prevalence in I. lusitanicum, while bacterial isolates displayed significantly lower virulence index values when virulence phenotypical expression was tested at 22 °C. Despite this study representing an initial trial, which needs support from further research, protective measures tested are considered a simple tool to be applied in ex situ breeding programs for aquatic animals worldwide. Furthermore, current results raise concern regarding antimicrobial resistance amplification and zoonotic transmission of Aeromonas spp. in aquatic ex situ programs.
- Against all odds: a tale of marine range expansion with maintenance of extremely high genetic diversityPublication . Robalo, Joana; Francisco, Sara M.; Vendrell, Catarina; Lima, Cristina S.; Pereira, Ana; Brunner, Benedikt P.; Dia, Mamadou; Gordo, L. S.; Castilho, RitaThe displacement of species from equatorial latitudes to temperate locations following the increase in sea surface temperatures is among the significant reported consequences of climate change. Shifts in the distributional ranges of species result in fish communities tropicalisation, i.e., high latitude colonisations by typically low latitude distribution species. These movements create new interactions between species and new trophic assemblages. The Senegal seabream, Diplodus bellottii, may be used as a model to understand the population genetics of these invasions. In the last decades, this species has undergone an outstanding range expansion from its African area of origin to the Atlantic coast of the Iberian Peninsula, where now occurs abundantly. Mitochondrial and nuclear markers revealed a striking high haplotypic nucleotide and genetic diversity values, along with significant population differentiation throughout the present-day geographical range of the Senegal seabream. These results are not consistent with the central-marginal hypothesis, nor with the expectations of a leptokurtic distribution of individuals, as D. bellottii seems to be able to retain exceptional levels of diversity in marginal and recently colonised areas. We discuss possible causes for hyperdiversity and lack of geographical structure and subsequent implications for fisheries.
- Agonistic sounds signal male quality in the Lusitanian toadfishPublication . Amorim, Maria Clara Pessoa; Conti, Carlotta; Modesto, Teresa; Gonçalves, Amparo; Fonseca, Paulo JorgeAcoustic communication during agonistic behaviour is widespread in fishes. Yet, compared to other taxa, little is known on the information content of fish agonistic calls and their effect on territorial defence. Lusitanian toadfish males (Halobatrachus didactylus) are highly territorial during the breeding season and use sounds (boatwhistles, BW) to defend nests from intruders. BW present most energy in either the fundamental frequency, set by the contraction rate of the sonic muscles attached to the swimbladder, or in the harmonics, which are multiples of the fundamental frequency. Here we investigated if temporal and spectral features of BW produced during territorial defence reflect aspects of male quality that may be important in resolving disputes. We found that higher mean pulse period (i.e. lower fundamental frequency) reflected higher levels of 11-ketotestosterone (11KT), the main teleost androgen which, in turn, was significantly related with male condition (relative body mass and glycogen content). BW dominant harmonic mean and variability decreased with sonic muscle lipid content. We found no association between BW duration and male quality. Taken together, these results suggest that the spectral content of fish agonistic sounds may signal male features that are key in fight outcome.