Browsing by Author "Silva, Gonçalo"
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- Acoustic fish community in a biogeographic transition zone of the Northeast AtlanticPublication . Ríos, Noelia; Pereira, Jodanne; Muñoz-Duque, Sebastian; Silva, Gonçalo; Pais, Miguel Pessanha; Fonseca, Paulo J; Vieira, Manuel; Amorim, Maria Clara P; Francis JuanesAbstract Fish sounds are a significant component of marine soundscapes. Recently, passive acoustic monitoring (PAM) arose as a promising tool for ecological monitoring, but a good characterization of fish acoustic communities is still needed. This study is the first to characterize the fish acoustic community at a biogeographic transition zone in the Northeast Atlantic. The research was conducted in a marine protected area (MPA) along the Portuguese mainland coast. Based on a literature review, we identified 29 (19.3%) sound-producing fish species present at this MPA, while 70 species (46.7%) were considered potentially soniferous. Using in situ acoustic recordings to detect potential fish sounds, we found 33 putative fish sounds that were categorized using a simple dichotomous classification. The temporal and spectral features of the 13 most prevalent sound types were characterized and compared among them and with available recordings to identify similarities. Finally, hydrophone recordings coupled with baited remote underwater video systems were tested as a method to identify sound sources. This study provides the first fish sound catalogue from the Portuguese mainland coast, laying the foundations to survey fish communities in coastal habitats with PAM.
- Deep dive into noninvasive biometrics: A pilot journey using stereo‐video in a public aquariumPublication . Ferreira, Ana Santos; Santos, Simão; Silva, Gonçalo; Baylina, NuriaAccurate collection of biometric data is important for understanding the biology and conservation of marine organisms, including elasmobranch and teleost fish, both in nature and controlled environments where monitoring marine specimens' health is mandatory. Traditional methods involving specimen capture and handling are invasive, stressful, and disruptive. Some techniques like underwater visual census or laser photogrammetry have been used for noninvasive data collection, but they have limitations and biases. The application of stereo‐video photogrammetry through the use of diver‐operated stereo‐video systems (stereo‐DOV) is a noninvasive method that overcomes these challenges, providing highly accurate measurements. It has become popular for species monitoring, studying anthropogenic impacts, and assessing length distributions. However, this technique is still uncommon and barely reported in aquarium settings. This study describes an innovative pilot study targeting multiple species carried out in a Public Aquarium, using a low‐cost house‐made device. The results revealed that measuring more than 100 individuals in approximately 1 day's work is possible. Total and fork lengths were estimated using specific software for 31 teleost and 16 elasmobranch species and compared with real measurements for the available species. Despite technical limitations that must be reviewed for application in future studies that resulted in high root mean square (RMS) values (> 20 mm), differences between methodological approaches revealed a minimal discrepancy (1.37%–5% in large sharks and rays and 1.8%–5.5% in teleost fish). This technique has time and cost requirements, but might represent a major advance in husbandry and in the contribution to conservation that ex situ studies can provide.
- Forecasting shifts in habitat suitability across the distribution range of a temperate small pelagic fish under different scenarios of climate changePublication . Lima, André R.A.; Baltazar-Soares, Miguel; Garrido, Susana; Riveiro, I. (Isabel); Carrera, Pablo; Piecho-Santos, A. Miguel; Peck, Myron; Silva, GonçaloClimate change often leads to shifts in the distribution of small pelagic fish, likely by changing the matchmismatch dynamics between these sensitive species within their environmental optima. Using present-day habitat suitability, we projected how different scenarios of climate change (IPCC Representative Concentration Pathways 2.6, 4.5 and 8.5) may alter the large scale distribution of European sardine Sardina pilchardus (a model species) by 2050 and 2100. We evaluated the variability of species-specific environmental optima allowing a comparison between present-day and future scenarios. Regardless of the scenario, sea surface temperature and salinity and the interaction between current velocity and distance to the nearest coast were the main descriptors responsible for the main effects on sardine's distribution. Present-day and future potential “hotspots” for sardine were neritic zones (<250 km) withwater currents <0.4ms−1, where SST was between 10 and 22 °C and SSS>20 (PSU), on average.Most variability in projected shifts among climatic scenarioswas in habitats with moderate to low suitability. By the end of this century, habitat suitability was projected to increase in the Canary Islands, Iberian Peninsula, central North Sea, northern Mediterranean, and eastern Black Sea and to decrease in the Atlantic African coast, southwest Mediterranean, English Channel, northern North Sea and Western U.K. A gradual poleward-eastward shift in sardine distribution was also projected among scenarios. This shift was most pronounced in 2100 under RCP 8.5. In that scenario, sardines had a 9.6% range expansion which included waters along the entire coast of Norway up and into the White Sea. As habitat suitability is mediated by the synergic effects of climate variability and change on species fitness, it is critical to apply models with robust underlying species-habitat data that integrate knowledge on the full range of processes shaping species productivity and distribution.
- Performance of the long-snouted seahorse, Hippocampus guttulatus, under warming conditionsPublication . Costa, Ana Beatriz; Correia, Miguel; Silva, Gonçalo; Lopes, Ana Filipa; Faria, Ana MargaridaTemperature is a determinant cue for several behavioral, physiological, and metabolic processes in fish, which occur within a range set to optimize species fitness. Understanding how ocean warming will impact species, at individual and population levels, is, therefore, of utmost relevance for management and conservation purposes. This knowledge assumes particular relevance when it comes to species with unique life history traits that experience multiple threats, such as seahorses. This study aimed to assess the effects of warming on growth, feed intake, and behavioral patterns of the long-snouted seahorse, Hippocampus guttulatus. Fish were collected, before the breeding season, in the Sado estuary, Portugal, and subsequently exposed for an 8-week period to three different temperatures: 17°C, 20°C, and 24°C. Three times a week, behavioral observations were performed. Feed intake was measured every day and individuals were weighed once a week. Results indicate differences in behavioral responses of seahorses exposed to increasingly warming conditions. Under extreme temperature conditions (24°C), fish were more active, and fed more, but this increment of energy through feeding did not translate into increased growth in weight. Altogether, these results indicate that Sado’s population of H. guttulatus may become under thermal stress when exposed, for a long term, to warming conditions that are expected to occur by the end of the century.
- Seasonal approach to forecast the suitability of spawning habitats of a temperate small pelagic fish under a high-emission climate change scenarioPublication . Lima, André R.A.; Garrido, Susana; Riveiro, I.; Rodrigues, Diana; Angélico, Maria M. P.; Gonçalves, Emanuel J.; Peck, Myron A.; Silva, GonçaloABSTRACT: Spawning habitats of cold-water, European small pelagic fishes have shifted poleward in the last three decades coincident with gradual ocean warming. We predicted present-day, season-specific habitat suitability for spawning by European sardine Sardina pichardus in the Atlantic Ocean and Mediterranean and Black Seas, and projected climate-driven changes in suitable areas from 2050-2099 under the IPCC – RCP 8.5 scenario. Sea surface temperature and distance to the coast had the greater influences in spawning habitats, reflecting the temperature- and coastal-dependent spawning of sardines. Chlorophyll-a was the third most important explanatory variable for spawning in winter to summer. Winds were predominantly important during autumn, whilst sea surface salinity was an important driver during spring and summer. Presentday, “hotspots” for spawning were identified in regions of highly productive, salty waters, where SST was between 6 and 18°C from autumn to spring or 16 and 25°C during summer and favourable winds occurred that would retain eggs and larvae closer to the coast (< 250 km). For future scenarios, forecasts indicate that environmental optima for spawning is projected to be in regions where SST varies between 11°C and 18°C from autumn to spring; and between 18°C and 24°C during summer. However, a negative relationship between phytoplankton productivity and habitat suitability induced by warming is likely to occur in the future. Projections suggest that suitable spawning habitats in all seasons will shift to higher latitudes, with a prominent range expansion along the coast of Norway during winter and autumn (> 83%). The total spawning area, however, was projected to contract in the future during spring (-10.5%) and autumn (-4.1%) due to losses of currently suitable areas along the Atlantic African Coast and Mediterranean Sea. Such regions currently support the greatest sardine stocks but climate-driven warming and decreased plankton productivity are projected to make these areas unsuitable for spawning and likely also for sardine fisheries in future.
- Targeted sequencing of mitochondrial genes reveals signatures of molecular adaptation in a nearly panmictic small pelagic fish speciesPublication . Baltazar-Soares, Miguel; Lima, André R.A.; Silva, GonçaloOngoing climatic changes, with predictable impacts on marine environmental conditions, are expected to trigger organismal responses. Recent evidence shows that, in some marine species, variation in mitochondrial genes involved in the aerobic conversion of oxygen into ATP at the cellular level correlate with gradients of sea surface temperature and gradients of dissolved oxygen. Here, we investigated the adaptive potential of the European sardine Sardina pilchardus populations offshore the Iberian Peninsula. We performed a seascape genetics approach that consisted of the high throughput sequencing of mitochondria's ATP6, COI, CYTB and ND5 and five microsatellite loci on 96 individuals coupled with environmental information on sea surface temperature and dissolved oxygen across five sampling locations. Results show that, despite sardines forming a nearly panmictic population around Iberian Peninsula, haplotype frequency distribution can be explained by gradients of minimum sea surface temperature and dissolved oxygen. We further identified that the frequencies of the most common CYTB and ATP6 haplotypes negatively correlate with minimum sea surface temperature across the sampled area, suggestive of a signature of selection. With signatures of selection superimposed on highly connected populations, sardines may be able to follow environmental optima and shift their distribution northwards as a response to the increasing sea surface temperatures.
- The european anchovy, a genetically highly diverse species displays null within-sample haplotype diversity on a single study?Publication . Castilho, Rita; Silva, GonçaloThe European anchovy has been the focus of numerous population genetic studies, most of which exposing high levels of haplotype diversity. However, Keskin and Atar (2012) revealed rather singular results of null haplotype diversities. We therefore call for caution when considering these findings.
- Towards a unified eco-evolutionary framework for fisheries management: Coupling advances in next-generation sequencing with species distribution modellingPublication . Baltazar-Soares, Miguel; Lima, André R.A.; Silva, Gonçalo; Gaget, ElieThe establishment of high-throughput sequencing technologies and subsequent large-scale genomic datasets has flourished across fields of fundamental biological sciences. The introduction of genomic resources in fisheries management has been proposed from multiple angles, ranging from an accurate re-definition of geographical limitations of stocks and connectivity, identification of fine-scale stock structure linked to locally adapted subpopulations, or even the integration with individual-based biophysical models to explore life history strategies. While those clearly enhance our perception of patterns at the light of a spatial scale, temporal depth and consequently forecasting ability might be compromised as an analytical trade-off. Here, we present a framework to reinforce our understanding of stock dynamics by adding also a temporal point of view. We propose to integrate genomic information on temporal projections of species distributions computed by Species Distribution Models (SDMs). SDMs have the potential to project the current and future distribution ranges of a given species from relevant environmental predictors. These projections serve as tools to inform about range expansions and contractions of fish stocks and suggest either suitable locations or local extirpations that may arise in the future. However, SDMs assume that the whole population respond homogenously to the range of environmental conditions. Here, we conceptualize a framework that leverages a conventional Bayesian joint-SDM approach with the incorporation of genomic data. We propose that introducing genomic information at the basis of a joint-SDM will explore the range of suitable habitats where stocks could thrive in the future as a function of their current evolutionary potential.
- Wandering behaviour prevents inter and intra oceanic speciation in a coastal pelagic fishPublication . Silva, Gonçalo; Cunha, Regina L.; Ramos, Ana; Castilho, RitaSmall pelagic fishes have the ability to disperse over long distances and may present complex evolutionary histories. Here, Old World Anchovies (OWA) were used as a model system to understand genetic patterns and connectivity of fish between the Atlantic and Pacific basins. We surveyed 16 locations worldwide using mtDNA and 8 microsatellite loci for genetic parameters, and mtDNA (cyt b; 16S) and nuclear (RAG1; RAG2) regions for dating major lineage-splitting events within Engraulidae family. The OWA genetic divergences (0-0.4%) are compatible with intra-specific divergence, showing evidence of both ancient and contemporary admixture between the Pacific and Atlantic populations, enhanced by high asymmetrical migration from the Pacific to the Atlantic. The estimated divergence between Atlantic and Pacific anchovies (0.67 [0.53-0.80] Ma) matches a severe drop of sea temperature during the Günz glacial stage of the Pleistocene. Our results support an alternative evolutionary scenario for the OWA, suggesting a coastal migration along south Asia, Middle East and eastern Africa continental platforms, followed by the colonization of the Atlantic via the Cape of the Good Hope.