Marine and Environmental Sciences Centre

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Organizational Unit

Publications

Towards a unified eco-evolutionary framework for fisheries management: Coupling advances in next-generation sequencing with species distribution modelling

Publication . Baltazar-Soares, Miguel; Lima, André R.A.; Silva, Gonçalo; Gaget, Elie

The establishment of high-throughput sequencing technologies and subsequent large-scale genomic datasets has flourished across fields of fundamental biological sciences. The introduction of genomic resources in fisheries management has been proposed from multiple angles, ranging from an accurate re-definition of geographical limitations of stocks and connectivity, identification of fine-scale stock structure linked to locally adapted subpopulations, or even the integration with individual-based biophysical models to explore life history strategies. While those clearly enhance our perception of patterns at the light of a spatial scale, temporal depth and consequently forecasting ability might be compromised as an analytical trade-off. Here, we present a framework to reinforce our understanding of stock dynamics by adding also a temporal point of view. We propose to integrate genomic information on temporal projections of species distributions computed by Species Distribution Models (SDMs). SDMs have the potential to project the current and future distribution ranges of a given species from relevant environmental predictors. These projections serve as tools to inform about range expansions and contractions of fish stocks and suggest either suitable locations or local extirpations that may arise in the future. However, SDMs assume that the whole population respond homogenously to the range of environmental conditions. Here, we conceptualize a framework that leverages a conventional Bayesian joint-SDM approach with the incorporation of genomic data. We propose that introducing genomic information at the basis of a joint-SDM will explore the range of suitable habitats where stocks could thrive in the future as a function of their current evolutionary potential.

2023Journal article

Open access

Trace elements’ reference levels in blood of breeding black-browed albatrosses Thalassarche melanophris from the Falkland Islands

Publication . Furtado, Ricardo; Granadeiro, J. P.; Campioni, Letizia; Silva, Mónica; Pereira, Eduarda; Catry, Paulo

Trace elements' concentration in the ocean is fast growing and is a source of major concern. Being charismatic and at the top of food chains, seabirds are often used as biological monitors of contaminants. We studied the concentration of trace elements in blood of black-browed albatross from the Falklands Islands, which we here show, by tracking with geolocators, forage over most of the Patagonian Shelf. Levels of trace elements were measured in males and females from two different islands. Blood concentrations of trace elements were not significantly different between islands, which is consistent with observations from foraging behavior revealing that birds from both islands foraged in broadly the same areas in the months before sampling. Arsenic and selenium concentrations in females were higher than in males. Sex-related differences in the concentration of these elements may be related to unknown slight differences in diet or to differences in assimilation between sexes. These results provide reference values for monitoring elemental contamination in the Patagonian Shelf Large Marine Ecosystem using black-browed albatrosses, one of the most abundant top predators and a suitable sentinel for the region's environmental health.

2020Journal article

Open access

Seabird diet analysis suggests sudden shift in the pelagic communities of the subtropical Northeast Atlantic

Publication . Romero, Joana; Catry, Paulo; Alonso, Hany; Granadeiro, José Pedro

The dynamics of the subtropical pelagic ecosystems of the Northeast Atlantic are still poorly known due to the high costs associated with sampling large oceanic areas. Top predators can be used as alternative low-cost samplers and indicators of the temporal variability of such systems. To study the variation in the composition of pelagic species through time in the broad Canary current region, we analysed foraging trips and regurgitations of Cory's shearwaters Calonectris borealis nesting on Selvagens islands, in 2008-2011 and 2016-2018. Fisheries data, oceanographic variables and the North Atlantic Oscillation were explored as possible explanatory variables for trends in behaviour and diet. Cory's shearwaters' diet, complemented by fisheries data, revealed marked changes in the composition of the pelagic fish communities. In 2016 there was a peak in the abundance of the Atlantic chub mackerel Scomber colias, followed by an explosive increase in the abundance of the Longspine snipefish Macroramphosus scolopax in 2017 and 2018, as deduced from the diet composition of the Cory's shearwater, and supported by fisheries data, in the broad oceanic area surrounding the Selvagens islands. Oceanographic variables did not show fluctuations correlated with these marked shifts in pelagic fish availability, the causes of which remain largely unknown. This study highlights the importance of the Atlantic chub mackerel and of the Longspine snipefish in the Madeira/Canary region and exemplifies the efficiency of avian predators in revealing rapid changes in pelagic communities of oceanic domains. Such trends and variations need to be better monitored and understood to measure the impact of ongoing global changes and to sustainably manage the marine environment and resources.

2021Journal article

Open access

Untangling causes of variation in mercury concentration between flight feathers

Publication . Gatt, Marie C.; Furtado, Ricardo Andrade; Granadeiro, José P.; Lopes, Daniel; Pereira, Eduarda; Catry, Paulo

Bird feathers are one of the most widely used animal tissue in mercury biomonitoring, owing to the ease of collection and storage. They are also the principal excretory pathway of mercury in birds. However, limitations in our understanding of the physiology of mercury deposition in feathers has placed doubt on the interpretation of feather mercury concentratoins. Throughout the literature, moult sequence and the depletion of the body mercury pool have been taken to explain patterns such as the decrease in feather mercury from the innermost (P1) to the outermost primary feather (P10) of the wing. However, it has been suggested that this pattern is rather a measurement artefact as a result of the increased feather mass to length ratio along the primaries, resulting in a dilution effect in heavier feathers. Here, we attempt to untangle the causes of variation in feather mercury concentrations by quantifying the mercury concentration as μg of mercury (i) per gram of feather, (ii) per millimetre of feather, and (iii) per day of feather growth in the primary feathers of Bulwer's Petrel Bulweria bulwerii chicks, effectively controlling for some of the axes of variation that may be acting in adults, and monitoring the growth rate of primary feathers in chicks. The mercury concentration in Bulwer's Petrel chicks' primaries increased from the innermost to the outermost primary for all three concentration measures, following the order of feather emergence. These observations confirm that the pattern of mercury concentration across primary feathers is not an artefact of the measure of concentration, but is likely an effect of the order of feather growth, whereby the earlier grown feathers are exposed to higher blood mercury concentrations than are later moulted feathers as a result of blood mercury depletion.

2021Journal article

Open access

The fate of plastic litter within estuarine compartments: an overview of current knowledge for the transboundary issue to guide future assessments

Publication . Pinheiro, L. M.; Agostini, V. O.; Lima, A. R. A.; Ward, R. D.; Pinho, G. L. L.

Plastics can enter biogeochemical cycles and thus be found in most ecosystems. Most studies emphasize plastic pollution in oceanic ecosystems even though rivers and estuaries are acknowledged as the main sources of plastics to the oceans. This review detected few studies approaching the transboundary issue, as well as patterns of estuarine gradients in predicting plastic distribution and accumulation in water, sediments, and organisms. Quantities of plastics in estuaries reach up to 45,500 items m-3 in water, 567,000 items m-3 in sediment, and 131 items per individual in the biota. The role of rivers and estuaries in the transport of plastics to the ocean is far from fully understood due to small sample sizes, short-term approaches, sampling techniques that underestimate small plastics, and the use of site-specific sampling rather than covering environmental gradients. Microfibres are the most commonly found plastic type in all environmental matrices but efforts to re-calculate pathways using novel sampling techniques and estimates are incipient. Microplastic availability to estuarine organisms and rising/sinking is determined by polymer characteristics and spatio-temporal fluctuations in physicochemical, biological, and mineralogical factors. Key processes governing plastic contamination along estuarine trophic webs remain unclear, as most studies used "species" as an ecological unit rather than trophic/functional guilds and ontogenetic shifts in feeding behaviour to understand communities and intraspecific relationships, respectively. Efforts to understand contamination at the tissue level and the contribution of biofouling organisms as vectors of contaminants onto plastic surfaces are increasing. In conclusion, rivers and estuaries still require attention with regards to accurate sampling and conclusions. Multivariate analysis and robust models are necessary to predict the fate of micro- and macroplastics in estuarine environments; and the inclusion of the socio-economic aspects in modelling techniques seems to be relevant regarding management approaches.

2021Journal article

Open access