Algarve Centre for Marine Sciences

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Publications

Complete mitochondrial genome of the branching octocoral Paramuricea grayi (Johnson, 1861), phylogenetic relationships and divergence analysis

Publication . Coelho, Márcio A. G.; Ledoux, Jean-Baptiste; Boavida, Joana; Paulo, Diogo; Gómez-Gras, Daniel; Bensoussan, Nathaniel; López-Sendino, Paula; Cerrano, Carlo; Kipson, Silvija; Bakran-Petricioli, Tatjana; Garrabou, Joaquim; EA, Serrao; Pearson, Gareth Anthony

The Gray’s sea fan, Paramuricea grayi (Johnson, 1861), typically inhabits deep littoral and circalittoral habitats of the eastern temperate and tropical Atlantic Ocean. Along the Iberian Peninsula, where P. grayi is a dominant constituent of circalittoral coral gardens, two segregating lineages (yellow and purple morphotypes) were recently identified using single-copy nuclear orthologues. The mitochondrial genomes of 9 P. grayi individuals covering both color morphotypes were assembled from RNA-seq data, using samples collected at three sites in southern (Sagres and Tavira) and western (Cape Espichel) Portugal. The complete circular mitogenome is 18,668 bp in length, has an A þ T-rich base composition (62.5%) and contains the 17 genes typically found in Octocorallia: 14 protein-coding genes (atp6, atp8, cob, cox1-3, mt-mutS, nad1-6, and nad4L), the small and large subunit rRNAs (rns and rnl), and one transfer RNA (trnM). The mitogenomes were nearly identical for all specimens, though we identified a noteworthy polymorphism (two SNPs 9 bp apart) in the mt-mutS of one purple individual that is shared with the sister species P. clavata. The mitogenomes of the two species have a pairwise sequence identity of 99.0%, with nad6 and mt-mutS having the highest rates of non-synonymous substitutions.

2022Journal article

Open access

Co-design of a marine protected area zoning and the lessons learned from it

Publication . Horta e Costa, Barbara; Guimarães, M. Helena; Rangel, M; Ressurreicao, Adriana; Monteiro, Pedro; Oliveira, Frederico; Bentes, Luis; Sales Henriques, Nuno; Sousa, Inês; Alexandre, Sofia; Pontes, João; Afonso, Carlos M. L.; Belackova, Adela; Marçalo, Ana; Cardoso-Andrade, Mariana; Correia, António José; Lobo, Vanda; Gonçalves, Emanuel J.; Pitta e Cunha, Tiago; Gonçalves, Jorge M. S.

Marine Protected Areas (MPAs) are a tool to safeguard marine natural systems, yet their effectiveness depends on how well they are integrated into the existing socioeconomic context. Stakeholder engagement in MPA design can contribute to increasing integration. This study focuses on the co-design of an MPA between researchers, public administration, the private sector, and non-governmental organizations. The proposed MPA is in Portugal and includes an area that is a hotspot for biodiversity and economic activities. This is the first MPA proposal in mainland Portugal co-designed using a participatory approach. This study highlights the steps of the zoning process and synthesizes the eight main lessons learned, useful for other cases, particularly for relatively small coastal MPAs with multiple socioeconomic activities. Three zoning proposals were developed and discussed within the participatory process. The proposals considered the best scientific and local knowledge available and were defined using ecological, socioeconomic, and shape-area guiding principles. In an iterative manner and following a participatory approach, compromises with stakeholders were achieved, and a final proposal, scientifically sound and socially accepted by most stakeholders, was delivered to the government. The final zoning plan will achieve ambitious conservation goals, including the largest fully protected area to be declared in mainland Portugal, while minimizing the impacts on the existing economic activities and promoting its sustainability. This process resulted in valuable lessons that may be applied elsewhere and guide future MPA implementation or rezoning of existing ones. These transdisciplinary and participatory processes can be time and resource-consuming but are vital for ensuring MPA effectiveness.

2022Journal article

Open access

Setting performance indicators for coastal marine protected areas: An expert-based methodology

Publication . Cardoso-Andrade, Mariana; Queiroga, Henrique; Rangel, M; Sousa, Inês; Belackova, Adela; Bentes, Luis; Oliveira, Frederico; Monteiro, Pedro; Sales Henriques, Nuno; Afonso, Carlos M. L.; Silva, Ana F.; Quintella, Cristina; Costa, José L.; Pais, Miguel P.; Henriques, Sofia; Batista, Marisa I.; Franco, Gustavo; Gonçalves, Emanuel J.; Henriques, Miguel; Leonardo, Teresa; Coelho, Paula; Comas-González, Robert; Fernández, Laura P.; Quiles-Pons, Carla; Costa, André; Espírito-Santo, Cristina; Castro, João J.; ARENAS, FRANCISCO; Ramos, Sandra; Ferreira, Vasco; Gonçalves, Jorge M. S.; Horta e Costa, Barbara

Marine Protected Areas (MPAs) require effective indicators to assess their performance, in compliance with the goals of relevant national and international commitments. Achieving and prioritizing shortlists of multidisciplinary indicators demands a significant effort from specialists to depict the multiple conservation and socioeconomic interests, and the large complexity of natural systems. The present paper describes a structured expert-based methodology (process and outputs) to co-define a list of multidisciplinary MPA performance indicators. This work was promoted by the management authority of coastal MPAs in mainland Portugal to gather a consensual and feasible list of indicators that would guide the design of a future national monitoring program. Hence, Portuguese coastal MPAs served as a case study to develop such a process between 2019 and 2020. In the end, participants (1) agreed on a shortlist of prioritized indicators (i.e., environmental, governance, and socioeconomic indicators) and (2) defined minimum monitoring frequencies for the indicators in this list, compatible with the potential replicability of the associated survey methods. The present approach recommends that management plans incorporate monitoring procedures and survey methods, with a validated list of indicators and associated monitoring periodicity, agreed among researchers, MPA managers and governance experts. The proposed methodology, and the lessons learned from it, can support future processes aiming to define and prioritize MPA performance indicators

2022Journal article

Open access

UN Ocean Conference needs transparent and science-based leadership on ocean conservation

Publication . Horta e Costa, Barbara; Goncalves, Jorge; Gonçalves, Emanuel J.

The United Nations Ocean conference convened in June 2022. Heads of state, businesses, and civil society organizations met in Lisbon to discuss how to scale up ocean action to achieve SDG 14 goals. In the face of the existential challenges of the climate emergency and species extinction crisis, bold and decisive action on ocean conservation through a shift in the protection paradigm is needed now. Recognizing existing barriers (e.g., political, organizational, social, economic) that operate at various scales (e.g., international, regional and national) and that are precluding achieving a healthy ocean is key and has to be addressed with strong leadership and sound commitments. A roadmap with clear steps and achievements including metrics assessing protection levels, stages of establishment, management effectiveness and equity is now needed to guarantee the success of marine conservation goals. Portugal can and should help lead the way by adopting such a roadmap and approach, but post-2020 decisions need to incorporate, beyond area goals, both the quality and effectiveness of ocean protection through metrics and standards such as those provided by the MPA Guide, Green List and Blue Parks.

2022Journal article

Open access

Seagrass connectivity on the west coast of Africa supports the hypothesis of grazer-mediated seed dispersal

Publication . Tavares, Ana I; Assis, Jorge; Patrício, A. R.; Ferreira, Rogério; Cheikh, Mohamed Ahmed Sidi; Bandeira, Salomao; Regalla, Aissa; Silva Dos Santos, Iderlindo Jorge; Potouroglou, Maria; Nicolau, Suzana; Teodosio, MA; Almada, Carmen; Santos, Rui; Pearson, Gareth Anthony; Serrao, Ester A.

Population connectivity influences the distribution of genetic diversity and divergence along a species range, as the likelihood of extinction or differentiation increases in isolated populations. However, there is still poor understanding of the processes mediating interpopulation dispersal in marine species that are sessile and lack planktonic life stages. One such case is the seagrass species Halodule wrightii, which produces basal seeds, although detached plants can drift. Along the tropical western coast of Africa, this species occurs in distant discontinuous habitats, raising the question of how interpopulation dispersal is mediated. The species is a key source of ecosystem functions including feeding large migratory grazers. This study aims to infer whether genetic differentiation of the seagrass H. wrightii along the western coast of Africa supports a hypothesis of predominant transportation of rafting seagrass by ocean currents, versus the hypothesis of biotic vectors of dispersal. Additional hypotheses were addressed concerning range-wide clonality and genetic diversity, assessed with microsatellite markers on populations of the west coast of Africa from Mauritania to Angola. Population genetic diversity and structure were compared with predictions from biophysical models of dispersal by oceanographic currents. The genetic data revealed low divergence among most populations, in strong contrast with predictions of very low probability of connectivity mediated by currents along the western African coastline. Moderate to high genotypic diversity showed important seed recruitment, but genetic and genotypic diversities were lower at range edges. Populations north and south of the equator were differentiated, and remarkably, so were neighboring equatorial populations despite their proximity. These results reveal independent sources of colonization of meadows in these islands, which are major habitat for migratory grazing green turtles, also supporting the hypothesis of biotically mediated seed transport. The importance of seagrass for conservation of endangered macrofauna has been widely reported; here we report evidence supporting the reciprocal role, that macrofauna protection can also plays a role in long-term survival and reproductive success of seagrass.

2022Journal article

Open access